PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G034000.1
Common NameB456_011G034000, LOC105777421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 259aa    MW: 28731.8 Da    PI: 8.8175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G034000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-1270116354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++v+ +k+L
  Gorai.011G034000.1  70 KSHSEAERRRRERINAHLDTLRTLLPYR-----EKMDKATLLGEVVRQVKEL 116
                         58*************************8.....8***********9988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.42167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1271118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1371122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAASYFNNKI FLSGNCYSGF LDPFSRDLGP CNGISQSLVL DNEKSELVVK SPVKVGKKSV  60
SEEKVIAALK SHSEAERRRR ERINAHLDTL RTLLPYREKM DKATLLGEVV RQVKELKKAA  120
TEASKGVLVP VDDDEVIVET CHDEANGTYC FKASICCDYR PQLLTDLRQA LDALPIKMVK  180
AEISTLGSRL RKDFVFTGCR TTANGDDAES RQYLAGSVRR ALNSVLEKAS ISPEYLPYST  240
FPKKRQRISY FDSSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456134.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0D2T1R40.0A0A0D2T1R4_G
STRINGVIT_14s0068g01580.t016e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-33bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]